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Neotropical Freshwater Fish (NFF) fauna exhibits the greatest phenotypic disparity and species richness among all continental aquatic vertebrate faunas, with more than 6,345 species distributed across the mostly tropical regions of Central and South America. The last two decades have seen a proliferation of molecular phylogenies, often at the species level, covering almost all 875 valid NFF genera. This study presents the most comprehensive genome-wide, time-calibrated phylogenetic hypothesis of NFF species to date, based on DNA sequences generated over decades through the collaborative efforts of the multinational ichthyological research community. Our purpose is to build and curate an extensive molecular dataset allowing researchers to evaluate macroevolutionary hypotheses in the NFF while facilitating continuous refinement and expansion. Using thousands of DNA sequences from dozens of studies, we compiled a supermatrix of 51 markers for 5,984 taxa, representing 3,167 NFF species. Based on this dataset, we built the most species-rich time-calibrated phylogeny of the NFF taxa to date, summarizing the collective efforts of the ichthyological research community since the midpoint of the last century. We provide a summary review of this remarkable evolutionary history and hope this dataset provides a framework for forthcoming studies of the NFF fauna, documenting compelling, emergent patterns in the world’s most diverse continental vertebrate fauna. 

Synopsis Apteronotidae and Mormyridae are species-rich clades of weakly electric fishes from Neotropical and Afrotropical freshwaters, respectively, known for their high morphological disparity and often regarded as a classic example of convergent evolution. Here, we use CT-imaging and 3D geometric morphometrics to quantify disparity in craniofacial morphologies, and to test the hypothesis of convergent skull-shape evolution in a phylogenetic context. For this study, we examined 391 specimens representing 78 species of Apteronotidae and Mormyridae including 30 of 37 (81%) of all valid genera with the goal to sample most of the craniofacial disparity known in these clades. We found no overlap between Apteronotidae and Mormyridae in the skull-shape morphospace using PCA and a common landmark scheme, and therefore no instances of complete phenotypic convergence. Instead, we found multiple potential instances of incomplete convergence, and at least one parallel shift among electric fish clades. The greatest components of shape variance in both families are the same as observed for most vertebrate clades: heterocephaly (i.e., opposite changes in relative sizes of the snout and braincase regions of the skull), and heterorhynchy (i.e., dorsoventral changes in relative snout flexion and mouth position). Mormyrid species examined here exhibit less craniofacial disparity than do apteronotids, potentially due to constraints associated with a larger brain size, ecological constraints related to food-type availability. Patterns of craniofacial evolution in these two clades depict a complex story of phenotypic divergence and convergence in which certain superficial similarities of external morphology obscure deeper osteological and presumably developmental differences of skull form and function. Among apteronotid and mormyrid electric fishes, craniofacial convergence is only skin deep. 

RESUMO Este trabalho é uma revisão das evidências geológicas sobre a origem do moderno rio Amazonas transcontinental, e a história paleogeográfica das conexões ribeirinhas entre as principais bacias sedimentares do norte da América do Sul durante o Neógeno. São revisados novos conjuntos de dados geocronológicos usando isótopos radiogênicos e estáveis, e de métodos geocronológicos tradicionais, incluindo sedimentologia, mapeamento estrutural, exploração sísmica e bioestratigrafia. O atual rio Amazonas e sua bacia continental se formaram durante o final do Mioceno e do Plioceno, através de alguns dos maiores eventos de captura de rio na história da Terra. Os sedimentos andinos são registrados pela primeira vez no leque fluvial do Amazonas por volta de 10,1-9,4 Ma, com um grande aumento na sedimentação a cerca de 4,5 Ma. O rio Amazonas transcontinental, portanto, se formou durante um período de cerca de 4,9 a 5,6 milhões de anos, por meio de vários eventos de captura de rios. Acredita-se que as origens do moderno rio Amazonas estejam ligadas às paisagens de inundação da América do Sul tropical (por exemplo, várzeas, pantanais, savanas sazonalmente inundadas). As áreas pantanosas persistiram em cerca de 10% do norte da América do Sul sob diferentes configurações por mais de 15 milhões de anos. Embora as reconstruções paleogeográficas apresentadas sejam simplistas, elas são oferecidas para inspirar a coleta e análise de novos conjuntos de dados sedimentológicos e geocronológicos. 

Using the most comprehensive fish occurrence database, we evaluated the importance of ecological and historical drivers in diversity patterns of subdrainage basins across the Amazon system. Linear models reveal the influence of climatic conditions, habitat size and sub-basin isolation on species diversity. Unexpectedly, the species richness model also highlighted a negative upriver-downriver gradient, contrary to predictions of increasing richness at more downriver locations along fluvial gradients. This reverse gradient may be linked to the history of the Amazon drainage network, which, after isolation as western and eastern basins throughout the Miocene, only began flowing eastward 1–9 million years (Ma) ago. Our results suggest that the main center of fish diversity was located westward, with fish dispersal progressing eastward after the basins were united and the Amazon River assumed its modern course toward the Atlantic. This dispersal process seems not yet achieved, suggesting a recent formation of the current Amazon system.